PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0233s0380.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 92aa    MW: 10554.7 Da    PI: 10.0976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0233s0380.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.5e-202272356
                     AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                            y+G+r+++ +g+++AeIrdp++ng  +r +lg+++taeeAa+a+++a+ +++g+
  SapurV1A.0233s0380.1.p 22 YRGIRRRP-WGKFAAEIRDPTKNG--ARRWLGTYDTAEEAARAYDRAAFAFRGH 72
                            9*******.***********9998..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.6E-362185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-312181IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-242180IPR016177DNA-binding domain
PROSITE profilePS5103224.5132179IPR001471AP2/ERF domain
PfamPF008471.0E-132272IPR001471AP2/ERF domain
CDDcd000187.52E-282280No hitNo description
PRINTSPR003677.7E-112233IPR001471AP2/ERF domain
PRINTSPR003677.7E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
METHQGEKST KKQEKGRGEN EYRGIRRRPW GKFAAEIRDP TKNGARRWLG TYDTAEEAAR  60
AYDRAAFAFR GHLAILNFPN EYQHQDPNSA M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-272279663ATERF1
3gcc_A1e-272279663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11028KKQEKGRGENEYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307640.15e-58hypothetical protein POPTR_0005s24450g
SwissprotQ9LTC54e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9H8L05e-58B9H8L0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24450.11e-57(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-22ERF family protein